Cope Labs Medicine Program

End-to-End Inspection Example

This example shows what a scoped engagement looks like from intake to final handoff.

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Download The Rough Draft Spec

This reference document shows both sides of the exchange: what a client submittal looks like and what the return package looks like.

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What You Submit

Target and objective in plain language.
Hard constraints (timeline, exclusions, jurisdiction).
Any seed compounds or known references.
Decision date and preferred review format.

What You Get Back

One package folder with named, versioned outputs.
A plain-language summary for decision-makers.
A ranked table and artifact manifest for reviewers.
Clear caveats and explicit next-step suggestions.

Scenario

A team asks for a quick first-pass package for one TB target, with optional patent-risk context.

Goal: shortlist compounds worth deeper review.
Timeline: scoped to one delivery cycle.
Output format: review-ready package with traceable files.

Inspection Goal

Can an external reviewer follow what was run?
Can they trace each output back to source files?
Can they see limits and caveats without digging?

Step-by-Step Flow

1. Intake And Scope Lock Target, constraints, output type, and review deadline are fixed before compute starts.
2. Tiered Screening Run Compounds are filtered stage by stage, with settings and timestamps recorded.
3. Optional Add-On Layers Patent-risk and clinical evidence layers are added when requested in scope.
4. Delivery Package Build Outputs are assembled into one handoff bundle with caveats and review notes.

What The Delivered Package Contains

Ranked Candidates CSV Included
Top compounds with core scores in one review sheet.
Findings Summary Included
Plain-language interpretation of key signals and warnings.
Run Settings + Provenance Included
Config paths, run window, source references, and ownership metadata.
Optional FTO Risk Layer Optional
Early patent-risk signal with cited records and jurisdiction tags.

Inspection Checks

Run settings match what was agreed at intake.
Each output file has a source path and timestamp.
No silent edits to already delivered files.
Limits and non-goals are explicitly listed.

Pass/Fail Criteria

Pass: package is traceable, understandable, and decision-ready.
Fail: package cannot be audited or assumptions are hidden.

Reference checklist: deliverable acceptance gates.

Example is anonymized and representative. Exact file names and timelines vary by scope.

Research support only. Outputs are decision support, not legal or medical advice.